[gmx-users] Problem in installation

Sat May 2 04:49:56 CEST 2015

> Dear All,
> 
> 
>            I am a new user for  GROMACS, and I meet one problem when installing the code.
>    When I run  
>            cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
>   

Check the following link, may be helpful
http://www.researchgate.net/post/How_do_I_solve_this_error_and_how_I_can_install_gromacs_through_yum


>    I obtain the following errors:
> ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>    -- No compatible CUDA toolkit found (v4.0+), disabling native GPU acceleration
>        -- Boost version: 1.54.0
> -- The GROMACS-managed build of FFTW 3 will configure with the following optimizations: --enable-sse2
> Downloading: http://gerrit.gromacs.org/download/regressiontests-5.0.4.tar.gz
> -- [download 100% complete]
> CMake Error at tests/CMakeLists.txt:58 (message):
>   error: downloading
>   'http://gerrit.gromacs.org/download/regressiontests-5.0.4.tar.gz' failed
> 
> 
>   status_code: 7
> 
> 
>   status_string: "Couldn't connect to server"
> 
> 
>   log: Hostname was NOT found in DNS cache
> 
> 
>     Trying 130.237.25.133...
> 
> 
>   Connected to gerrit.gromacs.org (130.237.25.133) port 80 (#0)
> 
> 
>   GET /download/regressiontests-5.0.4.tar.gz HTTP/1.1
> 
> 
>   User-Agent: curl/7.35.0
> 
> 
>   Host: gerrit.gromacs.org
> 
> 
>   Accept: */*
> 
> 
>   
> 
> 
>   HTTP/1.1 302 Found
> 
> 
>   Date: Fri, 01 May 2015 15:20:54 GMT
> 
> 
>   Server Apache/2.2.22 (Ubuntu) is not blacklisted
> 
> 
>   Server: Apache/2.2.22 (Ubuntu)
> 
> 
>   Location: https://kth.box.com/shared/static/53xl0qouhsvrbrbgtl4p.gz
> 
> 
>   Vary: Accept-Encoding
> 
> 
>   Content-Length: 325
> 
> 
>   Content-Type: text/html; charset=iso-8859-1
> 
> 
>   
> 
> 
>   Ignoring the response-body
> 
> 
>   <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
> 
> 
>   <html><head>
> 
> 
>   <title>302 Found</title>
> 
> 
>   </head><body>
> 
> 
>   <h1>Found</h1>
> 
> 
>   <p>The document has moved <a
>   href="https://kth.box.com/shared/static/53xl0qouhsvrbrbgtl4p.gz">here</a>.</p>
> 
> 
> 
> 
>   <hr>
> 
> 
>   <address>Apache/2.2.22 (Ubuntu) Server at gerrit.gromacs.org Port
>   80</address>
> 
> 
>   </body></html>
> 
> 
>   Connection #0 to host gerrit.gromacs.org left intact
> 
> 
>   Issue another request to this URL:
>   'https://kth.box.com/shared/static/53xl0qouhsvrbrbgtl4p.gz'
> 
> 
>   Hostname was NOT found in DNS cache
> 
> 
>     Trying 74.112.184.85...
> 
> 
>   Connected to kth.box.com (74.112.184.85) port 443 (#1)
> 
> 
>   successfully set certificate verify locations:
> 
> 
>     CAfile: none
>     CApath: /etc/ssl/certs
> 
> 
>   SSLv3, TLS handshake, Client hello (1):
> 
> 
> 
> 
> -- Configuring incomplete, errors occurred!
> See also "/home/zheliu/gromacs-5.0.4/build/CMakeFiles/CMakeOutput.log".
> See also "/home/zheliu/gromacs-5.0.4/build/CMakeFiles/CMakeError.log".
> 
> 
> ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> It seems that some part of the code cannot be downloaded.
> Could someone help me to deal with this?
> 
> 
> I really appreciate any help you can provide.
> 
> 
> --
> Best Wishes
> --
> *******************************************************************
>  
>  Zhe Liu
>  Ph.D. Candidate, Nuclear Fuel Cycle and Materials
>  School of Nuclear Science & Technology
>  University of Science & Technology of China
>  No.443 Huangshan Road, Hefei, Anhui, 230027
>  P.R. China
>  Tel: +86 136-6551-9817  Email: starship at mail.ustc.edu.cn    
>      
>              
> 
> ********************************************************************
> 
> 
with good wishes
Mahender singh
Science student