[gmx-users] question about Error message's meaning for Installation of gromacs 5.0.4

[Weilin Zhang]

Dear all:

 

I have used intel compiler to install Gromacs:

With the following setting:

 

 

CMAKE_PREFIX_PATH=/lustre1/lhlai_pkuhpc/wlzhang/fftw3 \

cmake ..
-DCMAKE_INSTALL_PREFIX=/lustre1/lhlai_pkuhpc/wlzhang/MD/gromacs-5.0.4-ICC/ \

-DGMX_GPU=off \

-DCMAKE_CXX_COMPILER=/opt/intel/impi/5.0.0.028/intel64/bin/mpiicpc \

-DCMAKE_C_COMPILER= opt/intel/impi/5.0.0.028/intel64/bin/mpiicc  \

-DGMX_MPI=ON \

-DGMX_PREFER_STATIC_LIBS=ON \

 

When it comes to the end of make -j 8

 

It gives me the flowing error messages:

 

../../lib/libgromacs_mpi.a(utilities.c.o): In function `gmx_isfinite':

/home/lhlai_pkuhpc/lustre1/wlzhang/gromacs-5.0.4/src/gromacs/math/utilities.
c:(.text+0x146a): undefined reference to `_finite'

../../lib/libgromacs_mpi.a(smalloc.c.o): In function `save_free_aligned':

/home/lhlai_pkuhpc/lustre1/wlzhang/gromacs-5.0.4/src/gromacs/utility/smalloc
.c:(.text+0x37b): undefined reference to `_aligned_free'

../../lib/libgromacs_mpi.a(smalloc.c.o): In function `save_free_aligned':

/home/lhlai_pkuhpc/lustre1/wlzhang/gromacs-5.0.4/src/gromacs/utility/smalloc
.c:(.text+0x37b): undefined reference to `_aligned_free'

../../lib/libgromacs_mpi.a(utilities.c.o): In function `gmx_isfinite':

/home/lhlai_pkuhpc/lustre1/wlzhang/gromacs-5.0.4/src/gromacs/math/utilities.
c:(.text+0x146a): undefined reference to `_finite'

 

It looks like I may missing some library or header files but I have not
clues how to find them.

 

Could you give me some hints?

 

Thnaks a lot!

 

Weilin