[gmx-users] modelling/adding missing residues in case of Fatal error: Incomplete ring in HIS3

[Justin Lemkul]

On 5/9/15 3:13 AM, James Lord wrote:
> Hi Justin,
> I opened up the strucutre in Swissviewr. Then how can I have a pdb with missing
> parts added?

It's done automatically.  You should see a window pop up indicating missing 
atoms and that they have been built back.  Then just save the .pdb file.  There 
are tutorials online for this and you should consult whatever documentation and 
help forums SwissPDBViewer may provide.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================