andrew.bostick1 at gmail.com
Tue May 12 06:36:44 CEST 2015
Very thanks for your answer
I should use my pdb file in which there is no bond between CD atom of GLU
residue from peptide 1 and NZ atom of LYS residue from peptide 2. Creating
new entry in specbond.dat file will consider this new bond. Is my vision
Based on your answer, only thing I should do is creating a new entry in
specbond.dat? Should I don't other thing?
Based on following link (
http://www.gromacs.org/Documentation/File_Formats/specbond.dat), my new
entry is as follows, is it true?
GLU CD 1 LYS NZ 1 0.13 GLU2 LYS2
How to get the accurate reference length for searching for candidate bonds?
In my system there is more than 1 Lys and 1 Glu residues. I want this new
bond between special residue of Lys (for example number: 28 ) and special
residue of Glu (for example number: 45). How to set this state in
I am beginner in this field. Please guide me about that.
Thanks in advance.
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