[gmx-users] question

[Andrew Bostick]

Dear Justin

Thanks for your attention.

I viewed coordination file, distance between these atoms are greater
than distance
criterion in specbond.dat file. you are right. I will correct this distance.

Is my manner true (1 new entry in specbond.dat file and 2 new entries in
aminoacids.rtp file)? If I correct this distance, will my problem resolve?

Thanks in advance.