[gmx-users] warter freeze into ice when "cutoff-scheme=Verlet" and "coulombtype = cut-off "
niexuechuan
niexuechuan at 126.com
Mon May 18 03:57:45 CEST 2015
Hi everyone,
I found that after gromacs version 4.6, when set "cutoff-scheme=Verlet" and "coulombtype= cut-off", the waters in the system will freeze into ice. I known that charge-groups are necessary when using plain cut-off electrostatics. But I'm surprised that why the waters freeze into ice when using plain cut-off electrostatics without charge-groups? Could someone explain how it happenes?
My mdp files are like this:
integrator = md
constraints = all_bonds
dt = 0.002
nsteps = 50000000
comm-mode =None
nstxout = 0
nstvout = 0
nstfout = 0
nstlog = 25000
nstxtcout = 500
xtc-precision = 1000
energygrps = MOL SOL
nstlist = 1
ns_type = grid
pbc = xyz
rlist = 1.0
coulombtype = cut-off
rcoulomb-switch = 0
rcoulomb = 1.0
vdw-type = cut-off
rvdw-switch = 0
rvdw = 1.0
Tcoupl = V-rescale
nsttcouple = -1
tc-grps = MOL SOL
tau_t = 0.1 0.1
ref_t = 300 300
freezegrps = MOL
freezedim = Y Y Y
Thanks!
Xuechuan
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