[gmx-users] position resrtraints

[soumadwip ghosh]

Dear Justin,
                thanka 4 ur prompt reply. I checked that there was
another issue. I didnot modify the aminoacids.rtp file in order to
incorporate the new graphene.pdb atom types according to the force
field. It appears to me that the correct interaction is not arsising
because the atoms mentioned in the PDB file is alien to the force
field. Is it the case? Should I modify the aminoacids .rtp file to
account for the sp2 carbon atoms and the terminal hydrogens mentioned
in the PDB file and then procced without really bothering about
pdb2gmx and position restraints? I think I made a very silly mistake
to begin with.

Your help, as always will be appreciated.

Regards,
Soumadwip
Research Fellow
IIT Bombay
India