[gmx-users] The octahedron problem

Vy Phan phanvy120690 at gmail.com
Tue May 19 13:18:17 CEST 2015

Dear Gromacs Users,
I have the problem with generating the octahedron box.  I always get the
rectangular box (using VMD)
When I searched on the gmx maillist, I saw some people met same problem.
Is problem is normal in gromacs?

After run simulation, I can display the trajectory on VMD by using the
command trjconv -pbc mol -ur compact for converting the system. But I can
not display the octahedron box after solvated system.

Could someone help me ?

Tuong Vy

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