[gmx-users] Generate the water box

[Vy Phan]

Dear all,
I can generate the cubic box or the rectangular box  with gmx solvate -cs
water.gro -box
 but I would like to have the octahedron box.I try many way but I can not.
How I can do it?

Thank a lot
Tuong Vy

2015-05-21 1:49 GMT+09:00 Justin Lemkul <jalemkul at vt.edu>:

>
>
> On 5/20/15 11:55 AM, 姚懿 wrote:
>
>> genbox without adding a protein.
>>
>>
> More specifically (and for 5.0):
>
> gmx solvate -cs water.gro -box (whatever size is needed)
>
> -Justin
>
>  On Wed, May 20, 2015 at 9:56 AM, Vy Phan <phanvy120690 at gmail.com> wrote:
>>
>>  Dear Gromacs Users,
>>>
>>> Can I generate only water on the Gromacs? I need water box only.
>>>
>>> Thank you
>>> Tuong Vy
>>> --
>>> Gromacs Users mailing list
>>>
>>> * Please search the archive at
>>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
>>> posting!
>>>
>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>>
>>> * For (un)subscribe requests visit
>>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
>>> send a mail to gmx-users-request at gromacs.org.
>>>
>>>
>>
>>
>>
> --
> ==================================================
>
> Justin A. Lemkul, Ph.D.
> Ruth L. Kirschstein NRSA Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 629
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> http://mackerell.umaryland.edu/~jalemkul
>
> ==================================================
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>