[gmx-users] non-glycosilated protein simulation
jalemkul at vt.edu
Sat May 23 17:29:46 CEST 2015
On 5/23/15 9:16 AM, Homa rooz wrote:
> Can I remove carbohydrate part of glycosilated protein from pdb structure
> then run MD by gromos force field?
You *can* do anything, but the better question is if you *should* do that. Is
the carbohydrate important for function, stability, etc? Are the dynamics of
the nearby residues important to your study?
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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