[gmx-users] Variation of distance between 2 CA atoms with time

[Justin Lemkul]

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On 5/27/15 12:52 AM, Biplab Ghosh wrote:
> Thank you Justin.
> I am sorry for not being able to properly pose the problem!
>
> I need to know the variation in distance between two residues during the
> course of the trajectory. I was not sure whether the command  was  correct
> or not!
>

The command is correct (for CA-CA distance, which is not necessarily the same as 
a residue-residue distance).  I didn't understand why you thought you hadn't 
achieved what you wanted.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
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University of Maryland, Baltimore
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Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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