[gmx-users] rtp file

[Justin Lemkul]

On 5/29/15 1:08 PM, shahab shariati wrote:
> Hi all
>
> I investigated dna.rtp file in amber03.ff.
>
> There is 4 residue types for adenine: DA5, DA, DA3 and DAN.
>
> I know about DA5, DA and DA3. But DAN is unknown for me.
>
> Please explain about DAN residue type.
>

Isolated nucleotide.  Note how it has both 5'-OH and 3'-OH.

http://ambermd.org/tutorials/basic/tutorial1/section2.htm

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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