[gmx-users] segmentation fault in equilibrium

[sara soleimanzadegan]

Thanks from your guidness.
Best RegardsSara 


     On Friday, November 13, 2015 3:59 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
   

 

On 11/13/15 3:01 AM, sara soleimanzadegan wrote:
>
> Dear Justin,
>
> Thank you from your response.
> No, there is not any warning from grompp.
> What is your idea?
>

Read the link I provided. Everything I would say is listed there.

-Justin

> Best Regards
> Sara
>
>
>
> On Friday, November 13, 2015 1:02 AM, Justin Lemkul <jalemkul at vt.edu> wrote:
>
>
>
> On 11/12/15 10:49 AM, mohammad agha wrote:
>> Dear Gromacs users,
>>
>> I have one system consists 150 surfactants and 14000 solvent molecules and 200 water molecules by martini force field.
>> When I want to reach my system to equlibrium with "mdrun pr", it isn't run and I have segmentation fault. Why is it and what is the solution for this problem?
>>
>
> http://www.gromacs.org/Documentation/Terminology/Blowing_Up
>
> Make sure you're not ignoring useful warnings from grompp.
>
> -Justin
>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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