[gmx-users] SASA Problem

Tom dnaafm at gmail.com
Tue Nov 17 17:27:40 CET 2015


Dear All,

I am calculating SASA of a grahene surface which is PBC bonded with image
atoms.
My system has a graphene soaked with water in one phase.

My surface is around 5*10 nm^2.
Why SASA give the value close to single face area?
I adjusted ndots until SASA converged to 72 nm.

I copied the VDW radii in the current directory and made sure that it has
the parameter for
graphene atoms.

Thanks for the help!

Tom


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