[gmx-users] surfactant.itp file
mahdiyeh poorsargol
poorsargol.m64 at gmail.com
Wed Nov 18 09:56:10 CET 2015
Hello
I'm a beginner in Gromacs and I want to work with the surfactant (for
example SDS surfactant). I converted the surfactant.pdb file to the
surfactant.itp file using TOPOLGEN, but for S atom, atomtype not
defined!
please help me. thankyou
[ atoms ]
; nr type resnr residue atom cgnr charge mass
typeB chargeB massB
.
.
30 opls_136 1 LIG C 10 -0.120 12.01100
31 opls_140 1 LIG H 10 0.060 1.00800
32 opls_140 1 LIG H 10 0.060 1.00800
33 opls_136 1 LIG C 11 -0.120 12.01100
34 opls_140 1 LIG H 11 0.060 1.00800
35 opls_140 1 LIG H 11 0.060 1.00800
36 opls_136 1 LIG C 12 -0.120 12.01100
37 opls_140 1 LIG H 12 0.060 1.00800
38 opls_140 1 LIG H 12 0.060 1.00800
39 1 0 S 12 32 0.000
0.00000
40 opls_236 1 LIG O 12 -0.500 15.99940
41 opls_154 1 LIG O 12 -0.683 15.99940
42 opls_155 1 LIG H 12 0.418 1.00800
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