[gmx-users] Checking solvent water positions

Timofey Tyugashev tyugashev at niboch.nsc.ru
Fri Nov 27 12:51:37 CET 2015

Is there any way to check if solvent waters can be positioned close 
enough (around 3,5A) to a specific atom in the protein during the MD run 
and how stable their positions are (i.e for how long a water molecule 
stays within a certain radius from this atom)?

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