[gmx-users] combine two pdb files

[masoud keramati]

hi

yes that's right. but it's renuber atoms not residues.
is the same residue number make an error?

tnx : )

On Sat, Nov 28, 2015 at 1:57 AM, Peter Stern <peter.stern at weizmann.ac.il>
wrote:

> AFAIK pdb2gmx doesn't care about the atom numbers in your pdb file since
> in any case it reorders them and renumbers them after adding hydrogen
> atoms.  Did you try it?
>
> Regards,
> Peter
>
> Sent from my iPad
>
> > On 27 בנוב׳ 2015, at 22:28, masoud keramati <keramati.ma3oud at gmail.com>
> wrote:
> >
> > Hello
> >
> > I want to simulate two proteins and need to combine these two pdb files
> in
> > one.
> > important thing is the atom number. if combine with cat command it gives
> a
> > file that contain two atom with the same atom and residue number that
> will
> > make an error in simulation.
> > is there exist any way to combine these two pdb files to solve this
> problem?
> > I mean if first pdb finish with atom number n and residue number m then
> > next pdb is start with atom number n+1 and residue number m+1.
> >
> > tnx
> > --
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