[gmx-users] Fwd: removing some atoms

[James Lord]

Hi all,

I sent this few days ago and I am still struggling with this, any
help,hints is highly appreciated.




---------- Forwarded message ----------
From: James Lord <jjamesgreen110 at gmail.com>
Date: Thu, Nov 26, 2015 at 11:18 PM
Subject: removing some atoms
To: "gmx-users at gromacs.org" <gmx-users at gromacs.org>


Hi all,

I have a oil slab and want to insert a protein so that almost half of the
protein is inserted into the oil and the other half is outside in the
vacuum. Is there any tools in Gromacs so that I can easily remove some of
the oil atoms and make a space for the protein insertion? My apology if it
seems a trivial question.

Cheers,
James