[gmx-users] Example of H REMD

Michael Shirts mrshirts at gmail.com
Mon Nov 30 16:54:02 CET 2015


Was this not useful?

> Most of this should still be applicable for 5.0.4.
> http://www.alchemistry.org/wiki/GROMACS_4.6_example:_Direct_ethanol_solvation_free_energy

On Mon, Nov 30, 2015 at 8:51 AM, Sanja Zivanovic
<sanja.zivanovic at irbbarcelona.org> wrote:
> Dear users,
>
> Could you please send me some example of inputs for Hamiltonian Replica
> exchange? It would be great if you can write me command line and attach mdp
> file. I would like to make H REMD for following ligand.
>
> Thanks in advance a lot
>
> Best Regards, Sanja
>
>
> --
> *Sanja Zivanovic*
> PhD Student
> https://www.linkedin.com/in/sanjazivanovic
>
> Molecular Modelling and Bioinformatics Laboratory
> Institute for Research in Biomedicine (IRB Barcelona)
> Parc Científic de Barcelona
> Baldiri Reixac 10, 08028 Barcelona, SPAIN
> Tel. (+34) 9340 37155
> http://www.irbbarcelona.org
>
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