[gmx-users] Hexagonal prisms box

[Juan David Orjuela Zuñiga]

Hello,


I'm trying to simulate a membrane in a hexagonal prism (I set it up with INSANE Python script for Martini, as I believe is actually the option by default) but when I visualize it in VMD it shows as triclinic. I attempted a solution I found on another discussion:


trjconv -f dopc-min-init.gro -o test.gro -ur compact -pbc cluster  -s dopc-min-init.tpr


But it shows a triclinic box again, am I missing something?


Thank you very much for your help, have a nice day,

Juan David