[gmx-users] Do not consider the previous email, it was a mistake, I'm sorry.

[Chiara Bello]

From: kiarabell at msn.com
To: gromacs.org_gmx-users at maillist.sys.kth.se
Subject: Position Restraints problem
Date: Wed, 14 Oct 2015 13:07:41 +0000




Hi, I'm trying to apply the positions restraints only on alpha helices of my protein but after running mdrun, when I open the output pdb file using vmd, the protein appear broken: there are some atoms of the not restrained residues, that have been separated from the protein.
My simulation is in implicit solvent, I have used Charm27 and