[gmx-users] frequency of contact between all residue pairs

[Dina Mirijanian]

Hello,

I need to calculate the contact frequence between all pairs of residues in
my protein within a certain cutoff. I was trying to figure out a way to do
this with g_mindist.  But I have not been able to get it do what I want.
Can someone tell me what is the best way to calculate the contact frequence
between all residues from a trajectory?
Thank you so much.
-Dina