[gmx-users] MD of two structure together-receptor+ligand

[Nikhil Maroli]

Dear Gromacs users,
i wanted to do MD after docking,i done docking and i selected one
conformation  i have receptor pdb and ligand pdb and i made one pdb with
both ?
now i wanted to do MD and see how the interaction goes on and to
learn/predict inhibition and antagonist behavior of the system.
so can anyone tell me how should start ?
should i start with one single pdb if yes how should i add topolgy for
drugs?
i have topolgy parameters from individual system generated from the server
i hope someone can help out here.
Thanks in advance

-- 
Ragards,
Nikhil Maroli