[gmx-users] Turning off nonbonded interactions in protein-DNA

[Peter Kroon]

gmx dump -s my_run.tpr
should give you all the information you need.

On 23/10/15 07:43, Kartheek wrote:
> Dear all,
> I am trying to do a simulation of protein-DNA complex by turning off all nonbonded interactions between protein and DNA, as suggested in the mailing list an "exclusions" section has been included in topology file. How do I know when I generate input file for mdrun whether these nonbonded interactions are turned off or not.
>