[gmx-users] Turning off nonbonded interactions in protein-DNA

Peter Kroon p.c.kroon at rug.nl
Fri Oct 23 09:41:24 CEST 2015

gmx dump -s my_run.tpr
should give you all the information you need.

On 23/10/15 07:43, Kartheek wrote:
> Dear all,
> I am trying to do a simulation of protein-DNA complex by turning off all nonbonded interactions between protein and DNA, as suggested in the mailing list an "exclusions" section has been included in topology file. How do I know when I generate input file for mdrun whether these nonbonded interactions are turned off or not.

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