[gmx-users] problem compiling gromacs 5.1

[Mark Abraham]

Hi,

That one's our fault, sorry :-( It'll be fixed in 5.1.1 out shortly, but
you can work around it by adding

-DSPHINX_EXECUTABLE=no

to your cmake call (which, by the way, still has a lot of stuff in it that
I've said you don't want to have)

Mark

On Sat, Oct 24, 2015 at 6:14 PM Ana Marija <sokovic.anamarija at gmail.com>
wrote:

> HI,
>
> I tried to configure gromacs 5.1 via:
>
> ams at login1:/lustre/beagle2/ams/new/gromacs/gromacs-5.1/build> cmake ..
> -DFFTWF_INCLUDE_DIR=/opt/fftw/3.3.4.0/abudhabi/include
> -DFFTWF_LIBRARY=/opt/fftw/3.3.4.0/abudhabi/lib/libfftw3f.a
>
> -DMPI_LIBRARY="/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libmpich.a;/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libfmpich_gnu_49.a;/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libmpl.a;/opt/cray/pmi/default/lib64/libpmi.a;/opt/cray/rca/default/lib64/librca.a;/opt/gcc/4.9.2/snos/lib64/libgfortran.a;/opt/gcc/4.9.2/snos/lib64/libstdc++.a;/opt/cray/alps/default/lib64/libalpslli.a;/opt/cray/alps/default/lib64/libalpsutil.a;/opt/gcc/4.9.2/snos/lib64/libgomp.a;/opt/gcc/4.9.2/snos/lib64/libquadmath.a;/opt/cray/ugni/default/lib64/libugni.a;/opt/cray/udreg/default/lib64/libudreg.a;/opt/cray/xpmem/default/lib64/libxpmem.a;/opt/cray/wlm_detect/default/lib64/libwlm_detect.a;/lib64/libdl.so.2"
> -DMPI_INCLUDE_PATH="/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/include"
> -DCMAKE_CXX_COMPILER=CC -DCMAKE_C_COMPILER=cc -DGMX_FORCE_CXX=ON
> -DGMX_DOUBLE=OFF -DGMX_PREFER_STATIC_LIBS=ON -DGMX_GPU=OFF -DGMX_MPI=ON
> -DCMAKE_INSTALL_PREFIX=/lustre/beagle2/ams/new/gromacs/ginstall
> -DGMX_X11=OFF -DGMX_EXTERNAL_BLAS=OFF -DGMX_EXTERNAL_LAPACK=OFF
>
>
> But I am getting this error:
> -- Found PythonInterp: /usr/bin/python (found version "2.6.9")
> CMake Error at cmake/FindSphinx.cmake:52 (string):
>   string sub-command REGEX, mode REPLACE needs at least 6 arguments total
> to
>   command.
> Call Stack (most recent call first):
>   docs/CMakeLists.txt:62 (find_package)
>
> line 62 in /lustre/beagle2/ams/new/gromacs/gromacs-5.1/docs/CMakeLists.txt
> looks like this:
>
>  find_package(Sphinx 1.2.3 QUIET COMPONENTS pygments)
>
> can you please advise me on what to do?
>
> Thanks
> Ana
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