[gmx-users] remove water

[Tsjerk Wassenaar]

Hi Sana,

You can use:

sed -e /SOL/d -e /HOH/d input.pdb > nowater.pdb

Hope it helps,

Tsjerk
On Oct 27, 2015 03:13, "Sana Saeed" <bioinformatic.lady at yahoo.com> wrote:

> hii want to remove water molecules from my pdb file using GROMACS. how can
> i just have protein and no water molecules. my pdb file has both. thanks in
> advance.
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