[gmx-users] Incomplete compiling Gromacs 5.1
pall.szilard at gmail.com
Fri Oct 30 14:09:44 CET 2015
On Thu, Oct 29, 2015 at 5:16 AM, Chunlei ZHANG <chunleizhang.pku at gmail.com>
> Dear All,
> I was trying to compiling Gromscs 5.1 on a cluster with with two 10-core
> Intel Xeon E5-2600 v3(Haswell) on each node.
> The command with cmake:
> cmake .. -DCMAKE_C_COMPILER=mpiicc \
> -DCMAKE_CXX_COMPILER=mpiicpc \
> -DGMX_MPI=on -DGMX_OPENMP=on \
> -DGMX_GPU=off \
> -DGMX_SIMD=AVX2_256 \
> -DGMX_DOUBLE=off \
> -DCMAKE_INSTALL_PREFIX=/my/path/GMX5.1 \
> -DBUILD_SHARED_LIBS=off \
> Then, I execute make, but received the following message:
> "make: warning: Clock skew detected. Your build may be incomplete."
If that's what you wanted fixed, have your admins sync the time between the
compute and files servers.
> Then, make install:
> In the bin folder, I only found these executables:
> demux.pl gmx-completion.bash gmx-completion-gmx_mpi.bash gmx_mpi GMXRC
> GMXRC.bash GMXRC.csh GMXRC.zsh xplor2gmx.pl
> Could anyone suggest possible solution to this?
> Thanks in advance!
> Best regards,
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