[gmx-users] Install Problem: make check, tests failed, incompatible library version

[Betty Wong]

Hi,

I am trying to install Gromacs. (I believe that) I have successfully done
the following:

tar xfz gromacs-5.1.3.tar.gz
cd gromacs-5.1.3
mkdir build
cd build
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
make


But when I get to make check, I get an error, I've copied and pasted only
one part of the what error output is.
 Start 20: MdrunMpiTests

20/26 Test #20: MdrunMpiTests ....................***Exception: Other  0.02
sec

dyld: Library not loaded: libxml2.2.dylib

  Referenced from:
/Users/bwong/Desktop/gromacs-5.1.3/build/bin/mdrun-mpi-test

  Reason: Incompatible library version: mdrun-mpi-test requires version
12.0.0 or later, but libxml2.2.dylib provides version 10.0.0

And if this helps as well:

The following tests FAILED:

  1 - TestUtilsUnitTests (OTHER_FAULT)

  2 - GmxlibTests (OTHER_FAULT)

  3 - MdlibUnitTest (OTHER_FAULT)

  4 - CommandLineUnitTests (OTHER_FAULT)

  5 - FFTUnitTests (OTHER_FAULT)

  6 - MathUnitTests (OTHER_FAULT)

  7 - RandomUnitTests (OTHER_FAULT)

  8 - OnlineHelpUnitTests (OTHER_FAULT)

  9 - OptionsUnitTests (OTHER_FAULT)

10 - UtilityUnitTests (OTHER_FAULT)

11 - FileIOTests (OTHER_FAULT)

12 - SimdUnitTests (OTHER_FAULT)

13 - LegacyToolsTests (OTHER_FAULT)

14 - GmxPreprocessTests (OTHER_FAULT)

15 - CorrelationsTest (OTHER_FAULT)

16 - AnalysisDataUnitTests (OTHER_FAULT)

17 - SelectionUnitTests (OTHER_FAULT)

18 - TrajectoryAnalysisUnitTests (OTHER_FAULT)

19 - MdrunTests (OTHER_FAULT)

20 - MdrunMpiTests (OTHER_FAULT)

Errors while running CTest

make[3]: *** [CMakeFiles/run-ctest] Error 8

make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2

make[1]: *** [CMakeFiles/check.dir/rule] Error 2

make: *** [check] Error 2

Any help? Not sure what the error is and how to fix. Thanks!

Best,
Betty