[gmx-users] Install Problem: make check, tests failed, incompatible library version

[Justin Lemkul]

On 8/8/16 1:35 PM, Betty Wong wrote:
> Hi,
>
> Posting again, hoping someone will help me! Much appreciated.
>
> I am trying to install Gromacs. (I believe that) I have successfully done
> the following:
>
> tar xfz gromacs-5.1.3.tar.gz
> cd gromacs-5.1.3
> mkdir build
> cd build
> cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
> make
>
>
> But when I get to make check, I get an error, I've copied and pasted only
> one part of the what error output is.
>  Start 20: MdrunMpiTests
>
> 20/26 Test #20: MdrunMpiTests ....................***Exception: Other  0.02
> sec
>
> dyld: Library not loaded: libxml2.2.dylib
>
>   Referenced from: /Users/bwong/Desktop/gromacs-
> 5.1.3/build/bin/mdrun-mpi-test
>
>   Reason: Incompatible library version: mdrun-mpi-test requires version
> 12.0.0 or later, but libxml2.2.dylib provides version 10.0.0
>

You need to upgrade to a newer version for this to work.

-Justin

> And if this helps as well:
>
> The following tests FAILED:
>
>   1 - TestUtilsUnitTests (OTHER_FAULT)
>
>   2 - GmxlibTests (OTHER_FAULT)
>
>   3 - MdlibUnitTest (OTHER_FAULT)
>
>   4 - CommandLineUnitTests (OTHER_FAULT)
>
>   5 - FFTUnitTests (OTHER_FAULT)
>
>   6 - MathUnitTests (OTHER_FAULT)
>
>   7 - RandomUnitTests (OTHER_FAULT)
>
>   8 - OnlineHelpUnitTests (OTHER_FAULT)
>
>   9 - OptionsUnitTests (OTHER_FAULT)
>
> 10 - UtilityUnitTests (OTHER_FAULT)
>
> 11 - FileIOTests (OTHER_FAULT)
>
> 12 - SimdUnitTests (OTHER_FAULT)
>
> 13 - LegacyToolsTests (OTHER_FAULT)
>
> 14 - GmxPreprocessTests (OTHER_FAULT)
>
> 15 - CorrelationsTest (OTHER_FAULT)
>
> 16 - AnalysisDataUnitTests (OTHER_FAULT)
>
> 17 - SelectionUnitTests (OTHER_FAULT)
>
> 18 - TrajectoryAnalysisUnitTests (OTHER_FAULT)
>
> 19 - MdrunTests (OTHER_FAULT)
>
> 20 - MdrunMpiTests (OTHER_FAULT)
>
> Errors while running CTest
>
> make[3]: *** [CMakeFiles/run-ctest] Error 8
>
> make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2
>
> make[1]: *** [CMakeFiles/check.dir/rule] Error 2
>
> make: *** [check] Error 2
>
> Any help? Not sure what the error is and how to fix. Thanks!
>
> Best,
> Betty
>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================