[gmx-users] Gromacs 2016 building issue

[Mark Abraham]

Hi,

GROMACS 2016 doesn't use libxml2 at all, so it looks like there's something
strange going on with how you've done that build, because there's no way
the template can have such a linking dependency.

Mark

On Thu, Aug 18, 2016 at 2:43 AM Quentin Kaas <q.kaas at imb.uq.edu.au> wrote:

> Hello,
>
> I just tried building Gromacs2016. The build went fine until it reached
> the linking stage:
>
> linking CXX executable ../../bin/template
> /opt/pkg/2015Q2/lib/libxml2.so.2: undefined reference to `gzopen64'
> collect2: error: ld returned 1 exit status
> make[1]: *** [bin/template] Error 1
> make: *** [share/template/CMakeFiles/template.dir/all] Error 2
>
> Could someone help me tell cmake to tell ld where the zlib library is?
>
> I compiled Gromacs-5.1.3 about 10 min before trying the new 2016 version
> and it went without any complaint. There might be something to fix in the
> 2016 version?
>
> Best wishes
>
> Quentin
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