[gmx-users] Help with gmx make_ndx

Nikhil Maroli scinikhil at gmail.com
Wed Aug 24 07:23:51 CEST 2016

It is difficult to understand what is the problem from your mail. if you
are  unable to use make_ndx try as follows
Copy the atoms you wanted to make as one group
manually create a group name and paste it.
You have to take care the mdp options such as energy groups and t-coupling

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