[gmx-users] Plumed-2.2.0 installation issue

[Justin Lemkul]

On 1/4/16 8:57 AM, tarak karmakar wrote:
> Dear All,
> Lately, I am trying to install Plumed-2.2.0 in one system, the steps I
> follow,
> ./configure prefix=/home/tarak/software/plumed-2.2.0 CXX=mpicxx
> make install
>
> Config.log shows no error, but while giving "make install" it is coming out
> of the process with the following errors,
>
> ------------------------------------------------------------------------------------------------------------------
> make -C src install
> make[1]: Entering directory `/home/tarak/software/plumed-2.2.0/src'
> make -C lib install
> make[2]: Entering directory `/home/tarak/software/plumed-2.2.0/src/lib'
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> WARNING: using PLUMED_PREFIX variable is not allowed anymore
>           please use one of the following choices:
>           (1) at configure time:
>             ./configure --prefix=/home/tarak/software/plumed-2.0.1
>           (2) or later, at install time:
>             make install prefix=/home/tarak/software/plumed-2.0.1
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> cd ../config ; make
> make[3]: Entering directory `/home/tarak/software/plumed-2.2.0/src/config'
> make PLUMED_FORCE=yes ConfigInstall.cpp Config.cpp version.h
> make[4]: Entering directory `/home/tarak/software/plumed-2.2.0/src/config'
> Updating ConfigInstall.cpp
> cmp -s ConfigInstall.cpp~ ConfigInstall.cpp || cp ConfigInstall.cpp~
> ConfigInstall.cpp
> rm ConfigInstall.cpp~
> Updating Config.cpp
> cmp -s Config.cpp~ Config.cpp || cp Config.cpp~ Config.cpp
> rm Config.cpp~
> Updating version.h
> make[4]: Leaving directory `/home/tarak/software/plumed-2.2.0/src/config'
> make Config.o ConfigInstall.o compile_options.sh
> make[4]: Entering directory `/home/tarak/software/plumed-2.2.0/src/config'
> cat ../../Makefile.conf | xxd -i > Makefile.conf.xxd
> compiling  Config.cpp
> g++: 2": No such file or directory
> make[4]: *** [Config.o] Error 1
> make[4]: Leaving directory `/home/tarak/software/plumed-2.2.0/src/config'
> make[3]: *** [all] Error 2
> make[3]: Leaving directory `/home/tarak/software/plumed-2.2.0/src/config'
> make[2]: *** [install] Error 2
> make[2]: Leaving directory `/home/tarak/software/plumed-2.2.0/src/lib'
> make[1]: *** [install] Error 2
> make[1]: Leaving directory `/home/tarak/software/plumed-2.2.0/src'
> make: *** [install] Error 2
> ------------------------------------------------------------------------------------------------------------------
>
> What could be the reason for the red colored message? I checked that
> Config.cpp file is present in the location the compiler has pointed to.
> Any suggestions?
>

I get plain text so I don't know what you've tried to highlight in red, but 
start with the big, bold WARNING above about a potential mismatch, and ask 
PLUMED questions on the PLUMED forum.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================