[gmx-users] (no subject)

[Justin Lemkul]

On 1/29/16 8:19 AM, Sepideh Momeninezhad wrote:
> thanks for your answer.
> I want to simulate DNA and peptide nucleic acid.
>

This is, in principle, no different than simulating any protein or nucleic acid 
system on their own.  pdb2gmx can handle complexes and will write the topology 
just fine.  A basic tutorial is all you need.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================