[gmx-users] Membrane

[Tsjerk Wassenaar]

Hi Abbas,

Please be more specific. What constraints do you mean? How did you setup
the system? What do you mean with 'collapse entirely'? A crash? What does
the log file say?

Cheers,

Tsjerk


On Tue, Mar 1, 2016 at 9:02 PM, Abbas Ebadi <a.ebadi2013 at gmail.com> wrote:

> Dear Gromacs Users,
> I'm trying to simulate the permeation of Dendrimer into a DPPC membrane.
> Whenever I use constraint in my simulations, they interact together easily
> without any problem. However, when I remove constraint, my system collapse
> entirely. How can I avoid this problem? thanks for your time.
> Regards
>
> --
> Abbas Ebadi,
> M.Sc. Student, Department of Chemical Engineering
> Amirkabir University of Technology(Tehran Polytechnic)
> 424 Hafez Ave, Tehran, Iran, 15875-4413
> Email: A.ebadi2013 at gmail.com <Hpourahmad1993 at gmail.com>
> Phone: (+98)910 458 8347
> --
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-- 
Tsjerk A. Wassenaar, Ph.D.