[gmx-users] Simulations of non standard nucleic acids
fprayagraj at gmail.com
Wed Mar 2 11:18:37 CET 2016
Hi Gromacs Users,
I am trying to simulate a RNA system with some modified nucleic acid
bases.. The problem is to generate the topologies for them.
Can anyone tell me how to generate them?? I am having the topologies in
amber prep format... How can i be able to use them in gromacs?? Further,
which forcefield would be better??
I am new to gromacs hence additional suggestions are welcome....
Thanks in advance.......
Mr. Prayagraj Fandilolu
Structural Bioinformatics Unit
Department of Biochemistry
Shivaji University, Kolhapur - 416004
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