[gmx-users] RMSD plot of the backbone atoms
jalemkul at vt.edu
Thu Mar 3 23:04:47 CET 2016
On 3/3/16 7:01 AM, Mahboobeh Eslami wrote:
> hi GMX usersi have done MD simulation for a protein-protein complex. i want to get RMSD plot of the backbone atoms for one of the protein chain. how do i prepare index file?thanks for your help
Use make_ndx. Type "help" at the prompt if you want examples. Otherwise, most
simple tutorials cover this.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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