[gmx-users] use of two index group simultaneously

Justin Lemkul jalemkul at vt.edu
Sun Mar 6 17:25:38 CET 2016

On 3/6/16 8:51 AM, Mahboobeh Eslami wrote:
>   hi all GMX usersI want to use of mindist command for two index groups that have already been created. how do I use of two index group simultaneously. when in use " -n index1.ndx -n index2.ndx" I get following error:fatal error:double command line argument -n

You need one index file with both groups.  This is true for just about every 
GROMACS program.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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