[gmx-users] do_dssp problem

badamkhatan togoldor bdmkhtn at yahoo.com
Tue Mar 22 17:20:48 CET 2016

Dear Gmx-Users,
I had done roughly 300ns peptide and membrane simulation. I am trying to do some analyses through the do_dssp. To get in .xpm file I put .xtc and .tpr files. Then at certain frame its just killed and gave me the empty files with strange names like ddccTf1j, ddmMD9pt, ddmuWFKI....in this case what should i do? reduce the reading frame number (300.000 frames)? or is it cluster related issue? Any advices and helps will be highly appreciated !         

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