[gmx-users] About RNA simulation

柳青 15110700076 at fudan.edu.cn
Thu Mar 24 14:20:17 CET 2016

hello, everyone,

       I wanted to simulate a dsRNA(PDB ID:2MVY) by using gromos53a6, but  failed at pdb2gmx. The error information said:

                   Fatal error:

                   atom N not found in buiding block 1GUA while combining tdb and rtp

                   For more information and tips for troubleshooting, please check the GROMACS

       I had made the nucleotide name agree with the rtp file. Can you help me?Thank you.

    Qing Liu

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