[gmx-users] (no subject)

[Rishikesh Parulekar]

Hi,

 I have completed simulation for 10ns and while analysing the trajectories
through UCSF chimera i encountered that for some time my protein structure
is getting distorted (pulled to other side from original confromation).
Because of this I am getting fluctuated RMSD. My input parameters for
md.mdp are same as mentioned in the bevan lab tutorial.  What could be the
possible reason ??

Thanks in advance

Your's faithfully
Rishikesh Parulekar