[gmx-users] REMD on more than one node

YanhuaOuyang 15901283893 at 163.com
Fri May 13 04:40:43 CEST 2016


Hi,
I am running a REMD with grimacs 5.0, I have 46 replica, 4 nodes, 16 cores per node. how can I use my compute resource and what’s the command of “gmx mdrun”?
the command is below, I am not sure weather it is right
mpirun -np 4 -npme gmx mdrun -s md_01.tpr  -multi 46 -replex 500 -reseed -1.
mpirun -np 4 -npme gmx mdrun -s md_02.tpr  -multi 46 -replex 500 -reseed -1.
mpirun -np 4 -npme gmx mdrun -s md_03.tpr  -multi 46 -replex 500 -reseed -1.
…
mpirun -np 4 -npme gmx mdrun -s md_46.tpr  -multi 46 -replex 500 -reseed -1.




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