[gmx-users] Calculating Distance

Sanket Ghawali sanket.ghawali at gmail.com
Mon May 16 09:20:15 CEST 2016

Dear, gmx-users,

Hello everyone,
I'm simulating a peptide in an SDS micelle. The simulation was
performed for 100ns
When I visualize the trajectory in VMD, the peptide moves to the SDS
interface where initially it was placed in the center,  the results
are as expected. I would like to calculate the distance the peptide
has traveled or moved from the center to the interface

Any suggestions on how to go about doing this?



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