[gmx-users] Help required for calculation of protein coverage % wrt time

Antara mazumdar antara.mazumdar at igib.in
Thu May 19 20:09:13 CEST 2016

Dear users,

Is there any script available to calculate % occupancy of residues with
respect to time? This in continuation with my previous query on percentage
of protein in contact with membrane??

Kind Regards,

Junior research fellow(project)
Systems biology group
CSIR-Institute of Genomics & Integrative Biology
South Campus
New Delhi -  110020
M : +91-9717970040

On Thu, May 19, 2016 at 6:35 PM, Antara mazumdar <antara.mazumdar at igib.in>

> Dear gromacs users,
> I have a peripheral membrane protein which I have simulated using Charmm
> 36 in a mixed lipids bilayer. I want to calculate the percentage of protein
> in contact with membrane wrt time. I already have residue wise distances
> from membrane calculated.
> Can anyone suggest me how to go about it after this?
> Antara Mazumdar
> Core Committee Member

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