[gmx-users] Help required for calculation of protein coverage % wrt time

[Antara mazumdar]

Dear users,

Is there any script available to calculate % occupancy of residues with
respect to time? This in continuation with my previous query on percentage
of protein in contact with membrane??

Kind Regards,
Antara

--
Junior research fellow(project)
Systems biology group
CSIR-Institute of Genomics & Integrative Biology
South Campus
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M : +91-9717970040
--



On Thu, May 19, 2016 at 6:35 PM, Antara mazumdar <antara.mazumdar at igib.in>
wrote:

> Dear gromacs users,
>
> I have a peripheral membrane protein which I have simulated using Charmm
> 36 in a mixed lipids bilayer. I want to calculate the percentage of protein
> in contact with membrane wrt time. I already have residue wise distances
> from membrane calculated.
>
> Can anyone suggest me how to go about it after this?
>
> Antara Mazumdar
>
> ISCB SC RSG-India
>
> Core Committee Member
>