[gmx-users] Help required for calculation of protein coverage % wrt time
antara.mazumdar at igib.in
Thu May 19 20:09:13 CEST 2016
Is there any script available to calculate % occupancy of residues with
respect to time? This in continuation with my previous query on percentage
of protein in contact with membrane??
Junior research fellow(project)
Systems biology group
CSIR-Institute of Genomics & Integrative Biology
New Delhi - 110020
M : +91-9717970040
On Thu, May 19, 2016 at 6:35 PM, Antara mazumdar <antara.mazumdar at igib.in>
> Dear gromacs users,
> I have a peripheral membrane protein which I have simulated using Charmm
> 36 in a mixed lipids bilayer. I want to calculate the percentage of protein
> in contact with membrane wrt time. I already have residue wise distances
> from membrane calculated.
> Can anyone suggest me how to go about it after this?
> Antara Mazumdar
> ISCB SC RSG-India
> Core Committee Member
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