[gmx-users] Analysis

jkrieger at mrc-lmb.cam.ac.uk jkrieger at mrc-lmb.cam.ac.uk
Fri May 20 13:09:16 CEST 2016


If you can't save a GROMACS compatible xtc from vmd then I suggest using
the mdconvert tool from mdtraj. It can convert between most commonly used
md trajectory formats and have used it for both CHARMM dcd to
GROMACS-compatible xtc and GROMACS xtc to a dcd that is readable by ProDy
with no problems.

Best wishes

> Hi,
> How to analyze in gromacs 4.5.7 from the  dcd file? I have vmd installed
> in my computer.
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