[gmx-users] WARNING no output error while dumping structures with trjconv from MD.trr
tsjerkw at gmail.com
Sat May 21 13:53:25 CEST 2016
You indicate you want the frame at 27ns (-dump 27000), but that's not in
the trajectory. The suggestion is to ask for a frame that is in, like -dump
On May 21, 2016 13:09, "Antara mazumdar" <antara.mazumdar at igib.in> wrote:
Dear gromacs users,
I was trying to dump structures from MD.trr using trjconv. The MD.trr
has 0ns to 382ns of data. (i checked the MD.log file also). However, when
i try to dump structures beyond 25ns, with the following command :
*gmx trjconv mpi -f MD.trr -dump 27000.000 -dt 1000 -s MD.tpr -b 20000.000*
*it gives the following error :WARNING no output, last frame read at
I have also tried to check with gmxcheck but it only runs till 20ns.
trjconv and or gmxcheck did not give any error with MD.xtc which was
generated during the simulation.
I require the MD.trr as i need velocity and force information for my
Kindly suggest something!!
Junior research fellow(project)
Systems biology group
CSIR-Institute of Genomics & Integrative Biology
New Delhi - 110020
M : +91-9717970040
Gromacs Users mailing list
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send
a mail to gmx-users-request at gromacs.org.
More information about the gromacs.org_gmx-users