[gmx-users] ffbonded.itp

[a.omidi at shirazu.ac.ir]

​Hi
I want to simulate a glycoprotein, I have defined a new residue with charmm36
I should define some angles, bonds and dihedrals for this new residue in ffbonded.itp file,
also in the ffbonded.itp file there is some other numbers and etc
I dont know what are these and how to define correctly these parametres for my sugar in my protein
could you help me
Thanks