[gmx-users] Hydrophobic interaction analysis

[Mijiddorj Batsaikhan]

Dear gmx users,

I simulated several peptide's folding. I would like to know the effects of
hydrophobic interaction for the folding. How can I make analysis and know
the effect of hydrophobic interaction?
Is it possible to assess the hydrophobic interaction using short range Van
der  Waals force?


Best regards,

Mijiddorj