[gmx-users] Re-center the trajectory

gozde ergin gozdeeergin at gmail.com
Fri Oct 21 15:07:25 CEST 2016


Dear all,

After 20 ns simulation I would like to re-center my trajectory according to the "centre of box” which is 2.4 2.4 15.
I almost tried all trjconv options (-pbc with mol, -center, -ur compact) however the trajectory still moves the +z/-z direction.
Is there any way to re-center the molecules according to the center of box?

Thanks


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