[gmx-users] gromacs.org_gmx-users Digest, Vol 149, Issue 12

[prithvi raj pandey]

Dear James,

Thank you for your reply. I have tried the trjconv for fixing PBC and it
works fine. I posted this query because I came across the following very
old thread

https://redmine.gromacs.org/issues/165

thus I wanted to make sure everything is fine.

Thanking you,

Prithvi



> -
>
> Message: 3
> Date: Sat, 3 Sep 2016 18:53:10 +0100
> From: jkrieger at mrc-lmb.cam.ac.uk
> To: gmx-users at gromacs.org
> Subject: Re: [gmx-users] Martini Lipid Bilayer Simulation
> Message-ID:
>         <7879df4f7b53d52a8a0dd534637e65fa.squirrel at mail.mrc-lmb.cam.ac.uk>
> Content-Type: text/plain
>
> Dear Prithvi,
>
> This sounds like diffusion through the periodic boundaries to me and not a
> problem at all. Try trjconv to fix it for visualisation as suggested at
> http://www.gromacs.org/Documentation/Terminology/
> Periodic_Boundary_Conditions
>
> Best wishes
> James
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