[gmx-users] CHARMM27 hates my DMPC

Vytautas Rakeviius vytautas1987 at yahoo.com
Tue Apr 4 14:52:14 CEST 2017


Hello,
I have my system with DMPC bilayers in pdb and try to convert it into GROMACS input. Because system is with lipids I think chose CHARMM27 ff. But still I get lots of warnings like that: 

https://pastebin.com/K8dHKkUi
Also I add my DMPC pdb as example. What should I do? Rename all my DMPC atoms?Thanks for all suggestions.




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